Just ran wp plugin active-on-sites backtype-connect on the production server and came up with two additional sites running the plugin:
+---------+------------------------------------------+
| blog_id | url |
+---------+------------------------------------------+
| 4730 | https://quincyworks.commons.gc.cuny.edu/ |
| 6697 | https://leec.commons.gc.cuny.edu/ |
+---------+------------------------------------------+
Took almost four times as long to run on the production server though (close to twenty minutes compared to five on the dev server).
I've just disabled backtype-connect for those two sites. Boone, I plan to remove backtype-connect from the codebase in 1.16.9 as well unless you want to do this in 1.17 instead.
One other thing is when I ran the wp-cli command, wp-cli threw some errors about two sites that do not have any wp_options tables.
The two sites do exist in the wp_blogs table though:
+---------+---------+---------------------------------+------+---------------------+---------------------+--------+----------+--------+------+---------+---------+
| blog_id | site_id | domain | path | registered | last_updated | public | archived | mature | spam | deleted | lang_id |
+---------+---------+---------------------------------+------+---------------------+---------------------+--------+----------+--------+------+---------+---------+
| 7851 | 1 | chrisdookie.commons.gc.cuny.edu | / | 2019-05-13 03:14:58 | 0000-00-00 00:00:00 | 1 | 0 | 0 | 0 | 0 | 0 |
| 7852 | 1 | chrisdookie.commons.gc.cuny.edu | / | 2019-05-13 03:15:29 | 0000-00-00 00:00:00 | 1 | 0 | 0 | 0 | 0 | 0 |
+---------+---------+---------------------------------+------+---------------------+---------------------+--------+----------+--------+------+---------+---------+
I think it should be safe to delete those sites with wp_delete_site().
Let me know what you think, Boone.